Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  282 bits (721), Expect = 2e-80
 Identities = 154/385 (40%), Positives = 229/385 (59%), Gaps = 15/385 (3%)

Query: 1   MKMAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMA 60
           M+  +  +L+VED+   R  ++  L    Y    AD  E A++ +K+ + D+V SD ++ 
Sbjct: 1   MEQPKLHILVVEDEPDQRALIVQMLTANQYLVESADSVEQAIVMIKASAPDLVFSDWKLG 60

Query: 61  GMGGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY 120
            + G+ LL  +++  P++  ++ TAY  I  AV AM+ GA DY+AKP+  + LL  + + 
Sbjct: 61  QLTGMDLLNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAIEKV 120

Query: 121 APV----KSDDNGDAVVADTKSL-----------KLLALADKVAKTDANVMILGPSGSGK 165
           A      + +    + ++  + L           K+     +V+ TDA V+I G SG+GK
Sbjct: 121 AKSIALKRQNRRLSSELSQQQELVGLVGRSALMQKVYQRVQRVSATDATVLIGGESGTGK 180

Query: 166 EVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGG 225
           E+ +R ++  S R   PF+AINC AIP+++ EA LFG EKGA+TGA     GK E A GG
Sbjct: 181 ELAARALYQLSARSHKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGG 240

Query: 226 TILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFR 285
           T+ LDEI E+ L  Q KLLR LQE  + RLG    IKLDVRV+A ++RDL+Q V  G FR
Sbjct: 241 TVFLDEIGELPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFR 300

Query: 286 EDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWP 345
           EDLYYRLNV P+  PAL ER +DI  L  H ++ H  + G+ VP ++ + +  LL++ WP
Sbjct: 301 EDLYYRLNVVPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWP 360

Query: 346 GNVRELDNVVQRALILSENGHIQSE 370
           GNVREL N ++R ++L +   +  E
Sbjct: 361 GNVRELANRIERFVLLGDEEEMVQE 385



 Score = 24.6 bits (52), Expect = 0.007
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 447 GRRKEMAEKLGISPRTLRYKLAKMRDAGID 476
           G  +EM ++LG +P+ L  K   + +AGI+
Sbjct: 377 GDEEEMVQELGAAPQPLDTKRFVLPEAGIE 406