Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  543 bits (1398), Expect = e-159
 Identities = 294/477 (61%), Positives = 349/477 (73%), Gaps = 32/477 (6%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           MA++K+L+VEDD  LREAL+DTL LA YE ++ + AE A++ LK    D+V+SDVQM G+
Sbjct: 1   MAEAKILLVEDDAALREALVDTLLLAQYECVDVESAEAAIVALKGQEFDMVISDVQMEGI 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAP 122
           GGL L+  ++QH   +P+LLMTA+A I  AVSA+K GA+DY+AKPFAPEVLLN VSRY  
Sbjct: 61  GGLGLVNYLQQHNAQVPILLMTAFATIDSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLK 120

Query: 123 VKSDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGP 182
            K  ++   VVAD +SL LLALA KVA++DA+VMI+GPSGSGKEV++RYIH  S R   P
Sbjct: 121 PKLIED-QPVVADERSLALLALAQKVAQSDASVMIMGPSGSGKEVLARYIHQHSQRANEP 179

Query: 183 FIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAK 242
           F+AINCAAIP+NMLEATLFGYEKGAFTGA QACPGKFEQAQGGT+LLDEISEMDL LQAK
Sbjct: 180 FVAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEISEMDLGLQAK 239

Query: 243 LLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPAL 302
           LLRVLQEREVERLG RK+IKLDVRVLATSNRDLK     G FREDLYYR+NVFPLTWPAL
Sbjct: 240 LLRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAMATKGDFREDLYYRINVFPLTWPAL 299

Query: 303 CERKDDIEPLANHLIERHCKKLGLPV-PSIAPNAITKLLNYPWPGNVRELDNVVQRALIL 361
            +R  DI PLA HL+ RH K  GL V PS+   A  +LL + WPGNVRELDNVVQRALIL
Sbjct: 300 HQRPADILPLARHLVLRHAKAAGLAVAPSLDDQASRRLLGHRWPGNVRELDNVVQRALIL 359

Query: 362 SENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSS 421
                I ++ I+++  D      L+ A   E    P+                       
Sbjct: 360 QTGDTICAKDIVIDTQD----VMLEPAFDSEKTVEPE----------------------- 392

Query: 422 QSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDIP 478
              GLG EL+ QE  IIL+TL +C G RK++AEKLGIS RTLRYK+A+MRD GI IP
Sbjct: 393 ---GLGDELKAQEHVIILETLNQCNGSRKQVAEKLGISARTLRYKMARMRDMGIQIP 446