Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  433 bits (1114), Expect = e-126
 Identities = 242/469 (51%), Positives = 312/469 (66%), Gaps = 7/469 (1%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +L+VEDD  LREA++DTL LAG   L A    +AL  L    V IVVSDV+M  M G+ L
Sbjct: 7   ILVVEDDPNLREAVVDTLELAGEAVLSAASGPEALKVLAERPVAIVVSDVRMEPMDGITL 66

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKSDD 127
           L+ I+  +P+LPV+LMTA+A++  AV AM+ GA D++ KPF P+ LL  V+RY      +
Sbjct: 67  LKEIRGQYPHLPVVLMTAFADVDRAVEAMRAGACDFLLKPFEPKALLEHVARYRLPAMGE 126

Query: 128 NGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAIN 187
           + D V  D  S  L +LA +VA+TDA V++ G SG GKEV++RYIHN S R++GPF+AIN
Sbjct: 127 DSDVVAVDAASRNLFSLAARVAQTDATVLLTGESGVGKEVVARYIHNHSARRKGPFVAIN 186

Query: 188 CAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVL 247
           CAAIP+++LEATLFGYEKGAFTGA QA  GKFEQAQ GT+LLDE++EM L LQAKLLRVL
Sbjct: 187 CAAIPESLLEATLFGYEKGAFTGANQAQAGKFEQAQNGTLLLDEVTEMPLALQAKLLRVL 246

Query: 248 QEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKD 307
           QEREVER+G ++ ++LD+RV+ATSNRD+ + V  G FREDLYYRLNVFPL  PAL +R D
Sbjct: 247 QEREVERVGGKQPVRLDIRVVATSNRDMAEAVAKGIFREDLYYRLNVFPLLIPALRQRPD 306

Query: 308 DIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHI 367
           D+ PLA H +     K G P   + P A   L  + WPGNVREL NV+QRALIL+    +
Sbjct: 307 DVVPLARHFLADQGGKSGRPGLLLTPAAEQALRVHSWPGNVRELVNVMQRALILAPGDQV 366

Query: 368 QSEHILLEGVDWHDASSLQQAVAGE--SMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSG 425
            + H+ L       A++    V      M  PQ+ P A P+       G  Q+   ++  
Sbjct: 367 DAAHLHLVARPGAPAAAAPAYVPPPPVMMEVPQLAPQA-PQAISVEEDGALQSGGKKAD- 424

Query: 426 LGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAG 474
               ++D E  +IL+TLA   G RK   EKLGIS RTLR+KL + R AG
Sbjct: 425 ---SIKDWERELILETLASVGGSRKLAVEKLGISERTLRHKLRQYRLAG 470