Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  302 bits (773), Expect = 2e-86
 Identities = 189/494 (38%), Positives = 274/494 (55%), Gaps = 48/494 (9%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M+ + +LIV+DD   R  L   L   GY   EAD  E A+ K++  + D V+ DV+MA M
Sbjct: 1   MSTATILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARM 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSR--- 119
            G+A LR I    P  PVL+MTA++++  AV A++ GA DY+ KP   +VL + + R   
Sbjct: 61  DGIAALRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALD 120

Query: 120 YAPVKSDDN-----------------GDAVVADTKSL-KLLALADKVAKTDANVMILGPS 161
           +  + S++                     ++  +  + +L+ +   VA ++A V+I G S
Sbjct: 121 HTRLASENRELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGES 180

Query: 162 GSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQ 221
           G+GKE+++R +H AS R   P + +NCAA+ + +LE+ LFG+E+GAFTGA +   G+F Q
Sbjct: 181 GTGKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQ 240

Query: 222 AQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQA 281
           A GGT+ LDEI EM L LQAKLLR LQ+ EV+R+GS   + +DVRV+A +NRDL++   A
Sbjct: 241 ADGGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAA 300

Query: 282 GHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLN 341
           G FREDLYYRLNV  +  PAL ER  D+  LA   ++R+ +K    +    P A+  LL 
Sbjct: 301 GRFREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLR 360

Query: 342 YPWPGNVRELDNVVQRALILSENGHIQSEHILLE--GVDWHDASSLQQAVAGESMAAPQI 399
           + WPGNVREL+N ++RA+IL+   ++    + L   G     A S   A  GE+      
Sbjct: 361 HDWPGNVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEA------ 414

Query: 400 KPVAEPEVFKPLVQGGGQNSSSQSSGL----GGELRDQEFAIILDTLAECQGRRKEMAEK 455
                          G  N+ +   GL    G  L D E   I+ TL E    + E A +
Sbjct: 415 ---------------GAGNAPADGDGLAPYAGLSLEDLERRAIIATLRETADNKSEAARR 459

Query: 456 LGISPRTLRYKLAK 469
           LGI+  TL  KL K
Sbjct: 460 LGITRATLHNKLKK 473