Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  293 bits (750), Expect = 8e-84
 Identities = 185/479 (38%), Positives = 264/479 (55%), Gaps = 42/479 (8%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M +  VL+VED+  +   +   L+ AGYE   A  AE A   L+    D+V++D+++ GM
Sbjct: 1   MTKHSVLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGM 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY-- 120
            G+ LL  I + +P   V+L+TA+  ++ AV A+K GA D++ KPF  + LL  V RY  
Sbjct: 61  NGMELLEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFR 120

Query: 121 --------APVKSD-DNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRY 171
                   A ++ + D+G+ +      LK+      +A +   V++LGPSGSGKE+++  
Sbjct: 121 FLDLKRENARLRGERDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAGA 180

Query: 172 IHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDE 231
           +H  S R++ PFI INCAA+P+++LE+ LFG+EKGAFTGA QA  GKFE A GGT+  DE
Sbjct: 181 LHRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFDE 240

Query: 232 ISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYR 291
             EM L +QAKLLRVL+++EV  +G     K+DVR +  + RDL++ + AG FREDLYYR
Sbjct: 241 AGEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYYR 300

Query: 292 LNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVREL 351
           +NV P+T P L ER  D+  LA   + R C +    V + +  A   LL Y +PGNVREL
Sbjct: 301 INVVPVTLPPLRERGGDVALLAERFLRRFCAQHDRQV-TFSEQARNALLAYDYPGNVREL 359

Query: 352 DNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPL 411
            N ++RA+IL     I   H+     D   AS  QQ                E   F  L
Sbjct: 360 RNAIERAVILCAEDKIHVGHLPKRIRDATQASQEQQP---------------EETRFVQL 404

Query: 412 VQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKM 470
             G  Q    +               IL+ L +  GRR   AE LGI+ + L  KL ++
Sbjct: 405 ADGVAQFEKKR---------------ILEALQKTGGRRIRAAELLGITRKQLWLKLKEL 448