Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., flagellar regulatory protein C (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  551 bits (1421), Expect = e-161
 Identities = 296/477 (62%), Positives = 353/477 (74%), Gaps = 33/477 (6%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M+++K+L+VEDD  LREAL+DTL LA Y+ ++    E+A+L LK H  D+V+SDVQM G+
Sbjct: 1   MSEAKLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALKQHQFDLVISDVQMPGI 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAP 122
           GGL LL  ++QH P LPVLLMTAYA I  AVSA+K GA+DY+AKPFAPEVLLN VSRY P
Sbjct: 61  GGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLP 120

Query: 123 VKSDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGP 182
           +K + +   VVAD KSL LL+LA +VA +DA+VMILGPSGSGKEV++RYIH  S R E  
Sbjct: 121 LKQNRD-QPVVADEKSLSLLSLAQRVAASDASVMILGPSGSGKEVLARYIHQHSSRAEEA 179

Query: 183 FIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAK 242
           F+AINCAAIP+NMLEATLFGYEKGAFTGA QACPGKFEQAQGGT+LLDEISEMDL LQAK
Sbjct: 180 FVAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEISEMDLGLQAK 239

Query: 243 LLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPAL 302
           LLRVLQEREVERLG RK+IKLDVRVLATSNRDLK  V AG FREDLYYR+NVFPLTWPAL
Sbjct: 240 LLRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAVVAAGQFREDLYYRINVFPLTWPAL 299

Query: 303 CERKDDIEPLANHLIERHCKKLG-LPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALIL 361
            +R  DI PLA HL+ +H K L  + +P     A  +LL++ WPGNVRELDNVVQRALIL
Sbjct: 300 NQRPADILPLARHLLTKHAKALNVVDLPEFDDAACRRLLSHRWPGNVRELDNVVQRALIL 359

Query: 362 SENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSS 421
                I +  I+++  D               + +   + ++EPE               
Sbjct: 360 RAGALITANDIIIDAQD-------------VPLTSDDAEYMSEPE--------------- 391

Query: 422 QSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDIP 478
              GLG EL+ QE  IIL+TL +CQG RK +AEKLGIS RTLRYK+A+MRD GI +P
Sbjct: 392 ---GLGEELKAQEHVIILETLVQCQGSRKLVAEKLGISARTLRYKMARMRDMGIQLP 445