Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., two-component system response regulator GlrR from Klebsiella michiganensis M5al

 Score =  294 bits (752), Expect = 5e-84
 Identities = 162/397 (40%), Positives = 249/397 (62%), Gaps = 18/397 (4%)

Query: 6   SKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGL 65
           +++L+V+DD GL + L   L   GY  L A+   +AL  L    VD+VVSD++M  M GL
Sbjct: 7   ARLLLVDDDPGLLKLLGMRLVSEGYSVLTAESGPEALRMLGRDKVDLVVSDLRMDEMDGL 66

Query: 66  ALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVS----RYA 121
            L   I++  P +PV+++TA+ +I DAV+A + G   ++ KP   + L   +     + A
Sbjct: 67  QLFSEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYKAIDDALEQSA 126

Query: 122 PVKSDDNGDAVVADTKSL-KLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKE 180
           P   +    A+V  +  + +LL  A  VA++D +V+I G SG+GKE++++ IHNASPR++
Sbjct: 127 PTTDERWRQAIVTRSPLMERLLEQAGMVAQSDVSVLINGQSGTGKEIIAQAIHNASPRRD 186

Query: 181 GPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQ 240
            PF+AINC A+P+ +LE+ LFG+ +GAFTGAV    G F+ A+GGT+ LDEI +M + LQ
Sbjct: 187 KPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPVALQ 246

Query: 241 AKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWP 300
            KLLRVLQER+V  LGS + I +DVR+++ ++RDL + +  G FREDL+YRLNV  L  P
Sbjct: 247 VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLFYRLNVVNLKIP 306

Query: 301 ALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALI 360
            L ER +DI  LANHL+ +   +    V + + +A+ +L+   WPGNVR+L NV+++ + 
Sbjct: 307 PLAERTEDIPLLANHLLRQSADRHKPFVRAFSTDAMKRLMAAKWPGNVRQLVNVIEQCVA 366

Query: 361 LSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAP 397
           L+ +  I               + ++QA+ GE+ A P
Sbjct: 367 LTSSPVISD-------------ALVEQALEGENTALP 390