Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  317 bits (811), Expect = 7e-91
 Identities = 189/489 (38%), Positives = 280/489 (57%), Gaps = 36/489 (7%)

Query: 6   SKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGL 65
           +K+LIV+DD  LR++    LA+ G++   A   E  L  ++    + V+ DV+M GM GL
Sbjct: 2   AKILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGL 61

Query: 66  ALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPF-APEVLL---------- 114
             L+++++    LPV++MTAYA  + A+ A K GA DY+ KPF  P++L           
Sbjct: 62  DALKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVEAGR 121

Query: 115 NMVSRYAPVKSDDNG---DAVVADTKSL-KLLALADKVAKTDANVMILGPSGSGKEVMSR 170
            M  R A      +G   +A+V  ++++ ++     + A TDA V++ G SG+GKE+++R
Sbjct: 122 RMRGRVAMTPEPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKELVAR 181

Query: 171 YIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLD 230
            I+  S R E P++ INC AIPD +LE+ LFGYEKGAFTGA     GK EQA GGT+ LD
Sbjct: 182 AIYQHSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGTVFLD 241

Query: 231 EISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYY 290
           EI +M L +QAKLLR+LQER++ERLG R++I +DVR++A +N DL+  V  G FREDLYY
Sbjct: 242 EIGDMPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFREDLYY 301

Query: 291 RLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRE 350
           RL V  L  P L ER++DI PLA   + R  +++  P P I+  A+  +  +PWPGNVRE
Sbjct: 302 RLKVVTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPGNVRE 361

Query: 351 LDNVVQRALILSENGHIQSEHI--LLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVF 408
           L N +Q+AL+ +    +  E I   LEGV    ++      AG+ +           ++ 
Sbjct: 362 LGNAIQKALVFNRGAPLLPEDIRQALEGVRGSTSTREGDEGAGDDLL----------QLV 411

Query: 409 KPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLA 468
           +  + GG  N+        G +      ++ + L    G R   A  LG+S  TL   LA
Sbjct: 412 RRTLSGGDDNAFETIMDHVGRI------VVREALQYTGGNRTRAARLLGMSRPTL---LA 462

Query: 469 KMRDAGIDI 477
           +M   G+ +
Sbjct: 463 RMERYGLKV 471