Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., transcriptional regulatory protein zraR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  316 bits (810), Expect = 9e-91
 Identities = 195/482 (40%), Positives = 278/482 (57%), Gaps = 42/482 (8%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M+   VLIV+DD   R  L   L   GY   EAD  E A+ K++  + D V+ DV+MA M
Sbjct: 1   MSDVTVLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARM 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLN------- 115
           GG+  LR I ++ P +PVL+MTAY++++ AV A++ GA DY+ KP   +VL +       
Sbjct: 61  GGIEALRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALD 120

Query: 116 ---MVSRYAPVKS--DDNGDA--VVADTKSLKLLA-LADKVAKTDANVMILGPSGSGKEV 167
              +VS    +KS  DD   A  ++  +  ++ LA L   VA ++A V+I G SG+GKE+
Sbjct: 121 HTRLVSENRELKSRLDDAARAPGIIGRSAPMRELAELVATVAPSEATVLITGESGTGKEL 180

Query: 168 MSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTI 227
           ++R +H  S R     + +NCAA+ +++LE+ LFG+E+GAFTGA +   G+F QA GGT+
Sbjct: 181 VARSLHEGSRRSAKQLVTVNCAALSESLLESELFGHERGAFTGADKRRDGRFVQADGGTL 240

Query: 228 LLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFRED 287
            LDEI E+ L LQAKLLR LQ+ E++R+GS   + +DVR+LA +NRDL++ V AG FRED
Sbjct: 241 FLDEIGELPLLLQAKLLRALQQGEIQRVGSDVPLTVDVRLLAATNRDLREEVAAGRFRED 300

Query: 288 LYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGN 347
           L+YRLNV  +  PAL ER DDI  LA H ++R+ ++    +    P A+  LL +PWPGN
Sbjct: 301 LFYRLNVIGIHMPALRERPDDIPLLAAHFLDRYAERNRKHLKGFTPQAMDMLLKHPWPGN 360

Query: 348 VRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEV 407
           VREL+N V+RA+I++               DW     L  ++ G   A P +   A P  
Sbjct: 361 VRELENAVERAVIMATG-------------DWVGERELPMSLRGAGGADPAVADAALP-- 405

Query: 408 FKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKL 467
                       + Q    G  L D E   I+ TL E    + E A +LGI+  TL  KL
Sbjct: 406 ------------TGQDPYAGLSLEDLERRAIVATLRETGDNKSEAARRLGITRATLHNKL 453

Query: 468 AK 469
            K
Sbjct: 454 KK 455