Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  296 bits (759), Expect = 8e-85
 Identities = 177/477 (37%), Positives = 268/477 (56%), Gaps = 45/477 (9%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +L+++D++     L   L  AGY     +  E AL  L+   VD+V++D++M  + G  +
Sbjct: 7   ILVIDDEKNYLLVLEALLTDAGYAVTALNDPETALAFLEESEVDVVITDMKMPRVTGREV 66

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPV---- 123
           L  +K+ WP++PV +MTA+ +I+ AV  MK GA DY+ KPF+ + LL  V   A +    
Sbjct: 67  LERVKKTWPHIPVCIMTAFGSIEGAVDVMKYGAFDYITKPFSNDELLLSVQNAAELSRVH 126

Query: 124 ----------KSDDNGDAVVADTKSLK-LLALADKVAKTDANVMILGPSGSGKEVMSRYI 172
                     +       ++  +K+++ +L + D+ A + + V+I G SG+GKE+++R I
Sbjct: 127 RQYRALRANLEERYGTHQIIGRSKAIREVLDMVDRAAPSRSTVLITGESGTGKELVARAI 186

Query: 173 HNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEI 232
           H +SPR  GPF+++NC A+   +LE+ LFG+EKG+FTGA+    G+FEQA GGT+ LDEI
Sbjct: 187 HFSSPRNSGPFVSVNCMALNPGVLESELFGHEKGSFTGAMAMRRGRFEQADGGTLFLDEI 246

Query: 233 SEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRL 292
            E+   LQ KLLRVLQER  ER+G    I++D+RV+A +N+DL++ V+ G FREDLYYRL
Sbjct: 247 GELTPELQVKLLRVLQERRFERVGGGDEIEVDIRVVAATNKDLQKEVENGTFREDLYYRL 306

Query: 293 NVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELD 352
           NV  +  P L ER++DI  L  H +E+  +  G+   +  P A   L  Y WPGN+R+L 
Sbjct: 307 NVVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPKTFTPEAHDYLTGYEWPGNIRQLQ 366

Query: 353 NVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLV 412
           NVV+R L+L  +  +  + +  E  D  + S L+ AV         + PV          
Sbjct: 367 NVVERCLVLVASDTVGVDDLPPEIRD--EESQLKSAV--------DLLPV---------- 406

Query: 413 QGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAK 469
                        L   L   E A+I   L   +  + + AE LGIS   L+YKL K
Sbjct: 407 ----------RLDLADTLEKIEAALIRRALVRAEFVQVKAAELLGISKSLLQYKLKK 453