Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  297 bits (760), Expect = 6e-85
 Identities = 181/478 (37%), Positives = 276/478 (57%), Gaps = 50/478 (10%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +L++EDD   +  L + L   GY     + AED +  ++S   D+V++DV + G+ G+  
Sbjct: 5   ILLIEDDTAFQGMLREALEERGYRVTAVNRAEDGVRIVRSGDFDLVLTDVMLPGISGVEA 64

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKSDD 127
           +  +++  P   +++MTA++  + A+ A+K GA D+ +KPF+ + L ++V R A  K   
Sbjct: 65  IPRLREAAPGTDIVVMTAFSTRELALEAVKLGAYDFFSKPFSLKEL-DIVIRRAMEKRRM 123

Query: 128 NGDAVVA------DTKSLKLL----------ALADKVAKTDANVMILGPSGSGKEVMSRY 171
            G+ V        DT + +++          AL +++A  ++ V+I+G SG+GKE+++  
Sbjct: 124 QGEIVALRETLRRDTPTSRIVGESRAMRDVKALLERIAPLESTVLIMGESGTGKELIADT 183

Query: 172 IHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDE 231
           I   SPR   PF+ +NCAAIP+++ E  LFG+EKGAFTGA  A PGKFEQAQGG I+LDE
Sbjct: 184 IRALSPRAANPFVKVNCAAIPEHLFENELFGHEKGAFTGAATAMPGKFEQAQGGMIMLDE 243

Query: 232 ISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYR 291
           I +M L +Q KLLRV+++++VERLG R  + LDVR++A +N++L + V+   FREDLYYR
Sbjct: 244 IGDMPLAIQPKLLRVVEQKQVERLGGRAPVPLDVRIIAATNQNLAERVREKAFREDLYYR 303

Query: 292 LNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVREL 351
           L+V  +  P L +RKDDI  LA + + +    LGLPV  ++P+AI  L+++ WPGNVR+L
Sbjct: 304 LSVAVVLIPPLRDRKDDIPLLAQYFVNKLEGTLGLPVHGLSPDAIAVLMDHDWPGNVRQL 363

Query: 352 DNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPL 411
            NV++RA I ++                          A + MAA  I       V K  
Sbjct: 364 ANVLERAAIAADG----------------------LICARDVMAA--IGTARGSNVDKAT 399

Query: 412 VQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAK 469
           + G           L   LR  E  +ILD L  C GR+ E A  LG++P+ L  KL K
Sbjct: 400 LSG---------MDLKTTLRMVERNLILDALRRCHGRQTEAAVLLGLTPKNLWAKLRK 448