Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., transcriptional regulatory protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  299 bits (766), Expect = 1e-85
 Identities = 192/470 (40%), Positives = 269/470 (57%), Gaps = 38/470 (8%)

Query: 28  AGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAG--MGGLALLRSIKQHWPNLPVLLMTA 85
           AGYE   A+  + A   ++    D++ S   + G  +  L  + S    +P  PV++ T 
Sbjct: 25  AGYEVGLAENLKGASAFIRKSGPDVIFSRPSLPGYRVDDLLAVGSDDPAFP--PVIVFTD 82

Query: 86  YANIQDAVSAMKDGAIDYMAKPFAPEVL---LNMVSRYAPVKSDDN------------GD 130
               ++A   +  GA DY  +P   E +   L    R AP     +            G 
Sbjct: 83  RGTPEEAEQLLALGARDYWLEPLTFEKVTAALPRPRRSAPAAPPQSTLGGRKPDPFPPGA 142

Query: 131 AVVADTKSLK-LLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCA 189
            +V    +L+ +L LA +VA + A V+I G SG+GKE+ +R +H  S R   PF+A+NCA
Sbjct: 143 RIVGSHPALRRVLGLARQVAPSRATVLISGESGTGKEMFARCLHGWSDRAANPFVAVNCA 202

Query: 190 AIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQE 249
           A+P+++LE+ LFG+E+GAFTGA+    G+FE A GGTILLDEISEMDL LQAKLLRVLQE
Sbjct: 203 ALPEHLLESELFGHERGAFTGAIARKLGRFELANGGTILLDEISEMDLGLQAKLLRVLQE 262

Query: 250 REVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDI 309
            E++R+G  +++K+DVRVLAT+NRDL+++V+ G FR+DL++RLNV PL  PAL ER DD+
Sbjct: 263 GEIDRVGGMETVKVDVRVLATTNRDLEEWVKQGKFRQDLFFRLNVIPLRLPALRERGDDV 322

Query: 310 EPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQS 369
             LA   I+ + +   LPVPS++  AI  L +Y WPGNVREL N+++RA++L+  G I  
Sbjct: 323 LELARFFIDLYVRDYTLPVPSLSDEAIAWLRSYEWPGNVRELQNLMERAVLLANGGAITP 382

Query: 370 EHILLEGVDW--HDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSGLG 427
            H LL+   W   + SS     AG   A  +                G Q  +   SG  
Sbjct: 383 GHFLLDPDAWPLFEESSDAGDTAGVQGAPDK----------------GAQVEAVNISGGV 426

Query: 428 GELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDI 477
             L + E  +IL  L    G R + AE LGIS RTLR KL + R  GID+
Sbjct: 427 IPLHEMERIMILKGLEATSGNRTQAAELLGISVRTLRNKLNEYRSMGIDV 476