Pairwise Alignments

Query, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) from Pseudomonas stutzeri RCH2

 Score =  206 bits (524), Expect = 2e-57
 Identities = 164/564 (29%), Positives = 281/564 (49%), Gaps = 50/564 (8%)

Query: 42  KMDFTVGDLDLLRQVVL--VLSISICVALIVMLFFWVREPDMRPL-GAYETEELIPVLDY 98
           K     G L L  +V L  +  I+  +A+ V  + W      RPL GA E+     V+  
Sbjct: 6   KSRLPAGGLQLDPRVTLAGMAVIAAALAVAVAFYLWRDNGSFRPLHGAGESFPAAEVMQI 65

Query: 99  LDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGLNQNRQAGDEILMQDMGFGVSQRLE 156
           LD +  QY++      ILV        +L +   G+   + AG E+  ++   G SQ ++
Sbjct: 66  LDGEALQYRIHPQSGQILVREDQLAQARLLLNAKGVKVAQPAGYELFDKEEPLGTSQFVQ 125

Query: 157 QERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEAS-ASVFLTVRTGANLK 215
             RLK S E +LA+ +  ++ V +ARV LA  + S FV   +  S ASV L +  G  L 
Sbjct: 126 DVRLKRSLEGELARTVMALKGVQQARVHLAQEENSSFVVSKRAPSKASVMLQLEPGYKLS 185

Query: 216 QEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALR 275
            +++ A+V++VA++VP +KP  V V DQ+G LLS G       A+  +   + QQ+ A  
Sbjct: 186 SDQVGAIVNLVANSVPNLKPEDVGVVDQYGALLSRGLNVGGGPAQNWQAVEDYQQKAA-- 243

Query: 276 GKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAG 335
           G I+ VL P+LGLGN+   V  ++DFS  E+T + +  +TP  R+E    +     +  G
Sbjct: 244 GNIEQVLAPVLGLGNFRISVAADIDFSQKEETFQSYG-DTPRLRNEVLRNESALDRLALG 302

Query: 336 VPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQSGVINRQ 395
           VPG+LSN+P       ++  Q+   +  G  S+ +E+TR  + D ++ H +     + +Q
Sbjct: 303 VPGSLSNRPLPPEPDGEEAQQLATEN-KGATSLREESTRQMDYDQSVVHVKHAGFALRQQ 361

Query: 396 TVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPFAEP 455
           +VAV + S ++  P  G   +T  + A++ +   ++   VG+ + RGDLL++  +PFA  
Sbjct: 362 SVAVVLNSAAA--PKGG---WTDEARAEMEA---MVRNAVGFKQERGDLLSLSVLPFAAV 413

Query: 456 E-MEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLVRPAMKKLINPAADNDDQMYGPD 514
           E +EQ+  VP WE+   +   +   + L+ ++++L++VRPA++ L         Q  G +
Sbjct: 414 EQIEQV--VPWWENSQIHALAKVGVAGLIALLLLLIVVRPAVRNLTQRNVQALPQGEGLE 471

Query: 515 GMPIGADGETSLIGS---------DIDGGELF------------EFGSGIDLPNLHKDED 553
           G  +      +L G          + +G  +F              GSG++L   H    
Sbjct: 472 GSLVEPSAPAALEGDARPALASPRESNGPHIFGELNPLSEIRLPAPGSGLELQIEH---- 527

Query: 554 VLKAVRALVANEPELAAQVVKNWM 577
               ++ L  N+PE  ++V+K+W+
Sbjct: 528 ----LQMLAKNDPERVSEVIKHWI 547