Pairwise Alignments

Query, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

Subject, 594 a.a., flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) from Pseudomonas stutzeri RCH2

 Score =  268 bits (685), Expect = 5e-76
 Identities = 179/568 (31%), Positives = 303/568 (53%), Gaps = 44/568 (7%)

Query: 47  VGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELIPVLDYLDQQKQQ 105
           + D+ +LRQV L++ ++  VA+   +  W ++PD RPL G+    +   V++ L      
Sbjct: 30  LSDMSMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLLGSLAGMDANQVMETLAAADIA 89

Query: 106 YKLDGNT--ILVPVSDYNSLKLSMVRAGLNQ-NRQAGDEILMQDMGFGVSQRLEQERLKL 162
           Y ++ N+  +LV  +D    +L +  AG+   +   G EIL +D G G SQ +E  R + 
Sbjct: 90  YTVEPNSGALLVKANDLARARLKLASAGIAPADSNIGFEILDKDQGLGTSQFMEATRYRR 149

Query: 163 SRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQEEIDAV 222
             E +L + I  +  V  ARV LA+PK SVFVR  ++ SASV + +  G  L+  ++ A+
Sbjct: 150 GLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEPSQVMAI 209

Query: 223 VDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVL 282
           +++VA++VP +  S++TV DQ G LLS   +    +   K+ +  ++ E     ++ ++L
Sbjct: 210 INLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQRVHNIL 269

Query: 283 IPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVA-GVPGALS 341
            P+LG G Y A+V  ++DFSAVE T + F+P+ PA RSE ++ +    ++   GVPGALS
Sbjct: 270 QPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQSSLPPQGVPGALS 329

Query: 342 NQPPADASIPQDVAQMKDGS--------------------VMGQGSV-------HKEATR 374
           NQPP  A+ P+   Q    +                      GQ  +        ++ATR
Sbjct: 330 NQPPGPAAAPEQANQAAAAAGAVAPGQPLLDANGQQIMDPATGQPMLAPFPADKREQATR 389

Query: 375 NYELDTTISHERKQSGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGT 434
           NYELD +IS+ ++Q G + R +VAV V  + ++N   GE+   P +  DL    +++  +
Sbjct: 390 NYELDRSISYTKQQHGRLRRLSVAVVVDDQMTLNA-AGEMVRVPWTADDLARFTRLVQDS 448

Query: 435 VGYSENRGDLLNVLSMPF-AEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLVR 493
           VG+  +RGD ++V++  F A+   E   ++P +  P F D V+     L I++++  ++R
Sbjct: 449 VGFDASRGDSVSVINTAFVADSFGETFEEIPFYSQPWFWDVVKQVLGVLFILVLVFGVLR 508

Query: 494 PAMKKLINPAADNDDQMYGPDGMPIGADGETSLIGSD---IDGGELFEFGSGIDLPNLHK 550
           P +K L NP++  + Q+    G     +G  S + +D   + G +       I LP+  +
Sbjct: 509 PVLKSLTNPSSGKELQVANGPGDLGDEEGLESGLSNDRVSLSGPQ------NILLPSPSE 562

Query: 551 D-EDVLKAVRALVANEPELAAQVVKNWM 577
             E  L A++ LVA++P   AQVVK W+
Sbjct: 563 GYEAQLNAIKNLVADDPGRVAQVVKEWI 590