Pairwise Alignments

Query, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., flagellar MS-ring protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  492 bits (1267), Expect = e-143
 Identities = 258/545 (47%), Positives = 375/545 (68%), Gaps = 6/545 (1%)

Query: 38  EKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPLGAYETEELIPVLD 97
           E  S +   +G  D+LRQV ++L+++IC+AL V +  W +EP+ RPLG +E +E+I VLD
Sbjct: 19  ENKSGVLGNLGSADMLRQVTMILALAICLALAVFVMMWAQEPEYRPLGKFEAQEMIQVLD 78

Query: 98  YLDQQKQQYKLDGNTILVPVSDYNSLKLSMVRAGLNQNRQAGDEILMQDMGFGVSQRLEQ 157
            LD+ K  Y++D + + VP   Y  ++L + R G++       + L QDMGFGVSQRLEQ
Sbjct: 79  VLDKNKIPYQVDFDVLRVPEDKYQDIRLLLSRNGVDAASTTNQDFLSQDMGFGVSQRLEQ 138

Query: 158 ERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQE 217
            RLK S+E+ LA+ IEE++ V++A+V+LALPK++VF R+  +ASA+V +T R G  L QE
Sbjct: 139 ARLKHSQEQNLARTIEELKSVSRAKVILALPKENVFARNQSKASATVVVTSRRGG-LGQE 197

Query: 218 EIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGK 277
           E+DA+VD+VASAV G++P+RVTVTD +GRLL+SGSQD  SA  R+E EL KQ+E   R K
Sbjct: 198 EVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGASARARRELELVKQKEAEYRAK 257

Query: 278 IDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGVP 337
           +D++L+PILG  NYT+QVD+ +DF+AVEQT K F+P+ PA RSE TLE   +G    G+P
Sbjct: 258 VDAILMPILGPENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRSEMTLETQTSGEANMGIP 317

Query: 338 GALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQSGVINRQTV 397
           GALSNQPP +++IPQ + + +D      G+ H+EATRNYELDTTISH R+Q GV+ R +V
Sbjct: 318 GALSNQPPMESNIPQTLQEAQD-KAQANGNSHREATRNYELDTTISHTRQQIGVVRRVSV 376

Query: 398 AVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPFAEPEM 457
           +VAV  ++      G+V     +EA+L +IR++L G VG+S  RGD + V+++PF +  +
Sbjct: 377 SVAVDYKTGEANTEGQVNRVARTEAELANIRRLLEGAVGFSGQRGDSIEVVTVPFMDQLV 436

Query: 458 EQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLVRPAMKKLI--NPAADNDDQMYGPDG 515
           E++ ++P+WE P F   ++  + +L I+++IL +VRP +KKL+  +     DD   G + 
Sbjct: 437 EEVPELPMWEQPWFWKAMKLASGSLAILVLILFVVRPLLKKLLLTDKVDMPDDGRLGHEL 496

Query: 516 MPIGADGETSLIG--SDIDGGELFEFGSGIDLPNLHKDEDVLKAVRALVANEPELAAQVV 573
             I        +G  +  D    +     I +PNLHKD+D++KA+RALVANEPEL+ QVV
Sbjct: 497 AEIEDQFAADTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVV 556

Query: 574 KNWMQ 578
           KNW+Q
Sbjct: 557 KNWLQ 561