Pairwise Alignments

Query, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., flagellar MS-ring protein (RefSeq) from Shewanella loihica PV-4

 Score =  464 bits (1195), Expect = e-135
 Identities = 246/564 (43%), Positives = 373/564 (66%), Gaps = 16/564 (2%)

Query: 24  GSDMDHDTQNPDINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRP 83
           G+    D     + E+        G +D+LRQ+ ++L+++IC+AL V +  W +EP+ RP
Sbjct: 6   GAGTTQDMLAGGVQEEHKPSGGMFGGVDMLRQITMILALAICLALAVFVMLWAQEPEYRP 65

Query: 84  LGAYETEELIPVLDYLDQQKQQYKLDGNTILVPVSDYNSLKLSMVRAGLNQNRQAGDEIL 143
           LG  +T+E++ VLD LD+ K  Y++D + + VP   Y  +K+ + RAG++ N  + D+ L
Sbjct: 66  LGKMDTQEMVQVLDVLDKNKVNYQIDVDVLKVPEDQYQDVKMMLSRAGID-NSPSRDDYL 124

Query: 144 MQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASAS 203
            +D GFGVSQR+E  RLK S+E+ LA+ IEE++ V++A+V+LA+PK++VF R+  + SA+
Sbjct: 125 SKDSGFGVSQRMEAARLKNSQEQNLARTIEELKSVSRAKVILAIPKENVFARNRSKPSAT 184

Query: 204 VFLTVRTGANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKE 263
           V +  R G  L QEE+D++VD+VASAV G++P+RVTVTD +GRLL+SGSQ   SA  R+E
Sbjct: 185 VVVNTRRGG-LGQEEVDSIVDIVASAVHGLEPTRVTVTDANGRLLNSGSQTAGSARARRE 243

Query: 264 QELEKQQEEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYT 323
            EL +Q+E   R KI+S+L+PILG  N+TAQVD+ +DF++VEQT K ++P+ PA RSE T
Sbjct: 244 LELVQQKEAEYRSKIESILMPILGPENFTAQVDVNMDFTSVEQTAKRYNPDLPAVRSEMT 303

Query: 324 LEDYNNGNVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTIS 383
           +E+ + G    G+ GALSNQPP +A+IPQ             GS HKEATRNYELDTTIS
Sbjct: 304 VENNSTGASTGGIAGALSNQPPMEANIPQQATGTSAQEQTLPGSSHKEATRNYELDTTIS 363

Query: 384 HERKQSGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGD 443
           H R+Q GV+ R +V+VAV  ++    + G+VT    +E +L++IR++L G VG++  RGD
Sbjct: 364 HTRQQVGVVRRVSVSVAVDFKTGPAGEDGQVTRVARTEQELSNIRRLLEGAVGFNTQRGD 423

Query: 444 LLNVLSMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLVRPAMKKLINPA 503
           ++ V+++PF +  +E+   + I+E P F   ++     L+I+++IL +VRP +K+LI P 
Sbjct: 424 MIEVVTVPFMDQLVEEAPALAIYEEPWFWRAIKLVMGGLIILVLILFVVRPMLKRLIYP- 482

Query: 504 ADNDDQMYGPDGMPIGAD---------GETSLIGSDIDGGELFEFGSGIDLPNLHKDEDV 554
               D    PD   +G +          +T  + +  D    +     I +P+LHKD+D+
Sbjct: 483 ----DGQKMPDAPSLGDELAEIEDQYAADTLGMLNRPDAEYSYADDGSILIPDLHKDDDM 538

Query: 555 LKAVRALVANEPELAAQVVKNWMQ 578
           +KA+RALVANEPEL+ QVVK W+Q
Sbjct: 539 IKAIRALVANEPELSTQVVKGWLQ 562