Pairwise Alignments

Query, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., flagellar M-ring protein FliF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  485 bits (1248), Expect = e-141
 Identities = 253/537 (47%), Positives = 371/537 (69%), Gaps = 6/537 (1%)

Query: 47  VGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPLGAYETEELIPVLDYLDQQKQQY 106
           +G +D++RQ+ ++L+++IC+AL V +  W +EP+ RPLG  ET+E++ VLD LD+ K +Y
Sbjct: 17  LGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPLGKMETQEMVQVLDVLDKNKIKY 76

Query: 107 KLDGNTILVPVSDYNSLKLSMVRAGLNQNRQAGDEILMQDMGFGVSQRLEQERLKLSRER 166
           ++D + + VP   Y  +K+ + RAG++    +  + L QD GFGVSQR+EQ RLK S+E 
Sbjct: 77  QIDVDVVKVPEDKYQEVKMMLSRAGIDSAATSKQDFLTQDSGFGVSQRMEQARLKHSQEE 136

Query: 167 QLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQEEIDAVVDMV 226
            LA+AIE+++ V++A+V+LALPK++VF R+  + SA+V +  R G  L Q E+DA+VD+V
Sbjct: 137 NLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGG-LGQGEVDAIVDIV 195

Query: 227 ASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVLIPIL 286
           ASAV G++PSRVTVTD +GRLL+SGSQD VSA  R+E EL +Q+E   R KIDS+L PIL
Sbjct: 196 ASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEYRTKIDSILSPIL 255

Query: 287 GLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQPPA 346
           G  N+T+QVD+ +DF+AVEQT K F+P+ P+ RSE T+E+ + G    G+PGALSNQPP 
Sbjct: 256 GHDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSNQPPM 315

Query: 347 DASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQSGVINRQTVAVAVKSRSS 406
           +++IPQ+ A     SV   G+ H+EATRN+ELDTTISH R+Q GV+ R +V+VAV  +  
Sbjct: 316 ESNIPQEAATAATESV-AAGNSHREATRNFELDTTISHTRQQIGVVRRVSVSVAVDFKPG 374

Query: 407 VNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPFAEPEMEQIVDVPIW 466
              + G+V     +E +L +IR++L G VG+S  RGD+L V+++PF +  +E +    +W
Sbjct: 375 AAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELW 434

Query: 467 EHPNFNDWVRWFASALVIIIVILVLVRPAMKKLINPAADN--DDQMYGPDGMPIGADGET 524
           E P F   V+    ALVI+++IL +VRP +K+LI P   N  +D   G +   I      
Sbjct: 435 EQPWFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDRVNMPEDGRLGNELAEIEDQYAA 494

Query: 525 SLIG--SDIDGGELFEFGSGIDLPNLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 579
             +G  +  +    +     I +PNLHKD+D++KA+RALVANEPEL+ QVVKNW+Q+
Sbjct: 495 DTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVVKNWLQD 551