Pairwise Alignments

Query, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

Subject, 561 a.a., flagellar MS-ring protein (RefSeq) from Shewanella sp. ANA-3

 Score =  486 bits (1250), Expect = e-141
 Identities = 252/546 (46%), Positives = 376/546 (68%), Gaps = 7/546 (1%)

Query: 38  EKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPLGAYETEELIPVLD 97
           E  S +  ++G +D++RQ+ ++L+++IC+AL V +  W +EP+ RPLG  ET+E++ VLD
Sbjct: 17  ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPLGKMETQEMVQVLD 76

Query: 98  YLDQQKQQYKLDGNTILVPVSDYNSLKLSMVRAGLNQNRQAGDEILMQDMGFGVSQRLEQ 157
            LD+ K +Y+++ + + VP   Y  +K+ + RAG+N    +  + L QD GFGVSQR+EQ
Sbjct: 77  VLDKNKIKYQIEVDVVKVPEDKYQEVKMMLSRAGVNSPAASTQDFLTQDSGFGVSQRMEQ 136

Query: 158 ERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQE 217
            RLK S+E  LA+AIE+++ V++A+V+LALPK++VF R+  + SA+V +  R G  L Q 
Sbjct: 137 ARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGG-LGQG 195

Query: 218 EIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGK 277
           E+DA+VD+VASAV G++PSRVTVTD +GRLL+SGSQD +SA  R+E EL +Q+E   R K
Sbjct: 196 EVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGISARARRELELVQQKEAEYRTK 255

Query: 278 IDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGVP 337
           IDS+L PILG  N+T+QVD+ +DF+AVEQT K F+P+ P+ RSE T+E+ + G    G+P
Sbjct: 256 IDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENNSTGGSTGGIP 315

Query: 338 GALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQSGVINRQTV 397
           GALSNQPP +++IPQD  +  +   +  G+ H+EATRN+ELDTTISH R+Q GV+ R +V
Sbjct: 316 GALSNQPPMESNIPQDATKATES--VTAGNSHREATRNFELDTTISHTRQQIGVVRRVSV 373

Query: 398 AVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPFAEPEM 457
           +VAV  +     + G+V     +E +L +IR++L G VG+S  RGD+L V+++PF +  +
Sbjct: 374 SVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLV 433

Query: 458 EQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLVRPAMKKLINPAADN--DDQMYGPDG 515
           E +    +WE P F   V+    ALVI+++IL +VRP +K+LI P + N  +D   G + 
Sbjct: 434 EDVPAPELWEQPWFWRAVKLGIGALVILVLILAVVRPMLKRLIYPDSVNMPEDSRLGNEL 493

Query: 516 MPIGADGETSLIG--SDIDGGELFEFGSGIDLPNLHKDEDVLKAVRALVANEPELAAQVV 573
             I        +G  +  +    +     I +PNLHKD+D++KA+RALVANEPEL+ QVV
Sbjct: 494 AEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVV 553

Query: 574 KNWMQN 579
           KNW+Q+
Sbjct: 554 KNWLQD 559