Pairwise Alignments

Query, 674 a.a., flagellar hook-length control protein FliK from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., flagellar hook-length control protein FliK (RefSeq) from Shewanella amazonensis SB2B

 Score = 89.0 bits (219), Expect = 6e-22
 Identities = 121/491 (24%), Positives = 201/491 (40%), Gaps = 56/491 (11%)

Query: 223 ATPPEAV---LPIESATAISNRALSTSAD-LDAAVSDSAATEDEIAQDEWMASALMGGAL 278
           A PPEA    +P+ +   I + ++  +AD L    SD     DE  + E +AS L  G  
Sbjct: 120 ALPPEAAASEMPVATDVVIDDASVDIAADALFLRFSDLMKQADE-GEREQIASEL--GMS 176

Query: 279 VGGLSGASLAAANTVHAEPVEGAMLEGMPLTQTFANTAALASPSAEVSEALAASSQALKA 338
           +  L      A NT+ A+    ++ +G+ L       A  A    + +  +A   Q L  
Sbjct: 177 LSALMALDETAFNTLMAD--NPSLKDGLALL--LQADAPGADTDNDAANQVALLMQTLLG 232

Query: 339 TPLTQ--SALNPASIMADEGLNQSTSATETGKV--------------VIPWGTQMPTDNE 382
            P+ Q  SA NP+   AD  L  S++     K               +   G     DN 
Sbjct: 233 APVQQNVSADNPSEHPADIRLGGSSAEAALNKAANLAPEQTRGLDVAMARVGGDPEVDN- 291

Query: 383 LAALTPELKAMLEEGGKA----------KAPVPNALAQSV--AQGLTPAHLAAQQTGTTA 430
            AA+T +  A   E  +           K     A  +++   +GL P  +A ++ G   
Sbjct: 292 -AAVTGKAMAGSTEAARTETFRAETDTKKGDAGQAFTRALEATRGLAPDAVAGKELGDFG 350

Query: 431 LPMNPTAATPIDIAALAPQTVAVNPMLNPAATVNPELAASSAMLAALGGRALAG-SDERR 489
                       + AL   +   +  +N       + A S   L A G  A +    E  
Sbjct: 351 NEGVSGITPQAGVEALTKVSADASSKVNAEQQDTVKEALSVKSLEAAGRAADSNLKAELP 410

Query: 490 AVSESGQEDLAQQIAAAAGQGTAQNQALNRAESQLVQTN-ATPVPLNKEMAADQLAE--- 545
           A+   GQ  + + +A        Q   ++   +  +    A   P+ +     + A    
Sbjct: 411 AIDAKGQASI-ESVADIKPPSPLQTSRIHETPAMTMSLRTAQERPMTQPDMVARFAPVMH 469

Query: 546 -RVQMMMSKNLKNIDIRLDPPELGRMHIRMNMQGDGATVHFTVANQHAREALEQTMPRLR 604
            ++  M+   ++  +IRLDPPELG M +R+ +QG+   V F V  Q  ++ +EQ MPRLR
Sbjct: 470 TQLIAMVRDGIQQAEIRLDPPELGSMMVRIQVQGNETQVQFHVNAQQTKDVVEQAMPRLR 529

Query: 605 EMLAQQGVQLGDTSVQQQSAGQQQRYTGQEQSGFGQSARNERLNSEENLDTDIKLDLNVA 664
           E+LAQQG++L D  V  +  G+ +   G++ +  G    ++ +  +E    +++L  N  
Sbjct: 530 ELLAQQGMELTDGQVSHERRGEGR---GRQDTPEG----SQFVTMDEFPAEELQLSANQT 582

Query: 665 TK-RDGISYYA 674
           T    GI YYA
Sbjct: 583 TSYSSGIDYYA 593



 Score = 29.3 bits (64), Expect = 5e-04
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 15  EPSKIAPTAKSSAVSTDAAATES-----------SGGFFAQLHALIFGSKTASDAPATSV 63
           E    A T K+ A ST+AA TE+           +G  F +  AL      A DA A   
Sbjct: 288 EVDNAAVTGKAMAGSTEAARTETFRAETDTKKGDAGQAFTR--ALEATRGLAPDAVAGKE 345

Query: 64  TQTEGD-------TEAPVNTEAVLEADSDAALMAEMDDALFSASEVEAASEEGLPVDVIK 116
               G+        +A V     + AD+ + + AE  D +  A  V++    G   D   
Sbjct: 346 LGDFGNEGVSGITPQAGVEALTKVSADASSKVNAEQQDTVKEALSVKSLEAAGRAADSNL 405

Query: 117 SAQKAPSLEKGEAISTKVAPVK 138
            A+      KG+A    VA +K
Sbjct: 406 KAELPAIDAKGQASIESVADIK 427