Pairwise Alignments

Query, 674 a.a., flagellar hook-length control protein FliK from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., flagellar hook-length control protein (RefSeq) from Shewanella loihica PV-4

 Score =  104 bits (259), Expect = 1e-26
 Identities = 123/455 (27%), Positives = 200/455 (43%), Gaps = 66/455 (14%)

Query: 229 VLPIESATAISNRALSTSADLDAAVSDSAATEDEIAQDEWMA-SALMGGALVGGLSGASL 287
           +LP+ +  ++ + A+      DA     A T   +++DE  A    M   L+ G++G + 
Sbjct: 171 ILPVINPNSLGSEAILAQLPEDALSEVMAQTG--LSKDELTALPPQMLEGLIHGIAGKNK 228

Query: 288 AAANTVHAEPVEGAMLEGMPLTQTFANTAALASPSAEVSEALAASSQALKATPLTQSALN 347
           +           G + +   L    A  AAL + + +   A A+ SQ+  A   T+ +  
Sbjct: 229 SG---------NGELGQAEALESDAAKLAALINDAKQYLSAKASQSQSNLAATQTEPSQG 279

Query: 348 PASIMADEGLNQ----STSATETGKVVIPWGTQMPTDNELAALTPELKAMLEEGGKAKAP 403
            A   +  GLNQ        ++TG           +  E A     +KA+L E    ++ 
Sbjct: 280 -AGGASQAGLNQVGLNQNEISQTGLT----SANNASGVESAVNEKGVKAILGESKVGESK 334

Query: 404 VPNALAQSVAQGLTPAHLAAQQTGTTALPMNPTAATPIDIAA---LAPQTVAVNPMLNPA 460
              A        L  A LAA+Q    AL     A      AA   L    +AV   ++P 
Sbjct: 335 FGEAK-------LADAKLAAEQAQNGALKTTSGAEGRDGKAAQELLKGANLAVT--MSPK 385

Query: 461 ATVNPELAASSAMLAALGGRALAGSDERRAVSESGQEDLAQQIAAAAGQGTAQNQALNRA 520
           A   P+ AA+   L AL  + L G+  R  V    Q  +  Q     G+   Q Q +   
Sbjct: 386 AGEMPD-AAADTKLNALSLQGLQGA--RNEVLPQYQVSIKPQ-----GEPVTQMQEMIHK 437

Query: 521 ESQLVQTNATPVPLNKEMAADQLAERVQMMMSKNLKNIDIRLDPPELGRMHIRMNMQGDG 580
            S +++                  +++  M+S+ ++  +IRLDPPELG M +R+ +QGD 
Sbjct: 438 FSPVMR------------------QQLVAMVSQGVQQAEIRLDPPELGHMMVRVQVQGDQ 479

Query: 581 ATVHFTVANQHAREALEQTMPRLREMLAQQGVQLGDTSVQQQSAGQQQRYTGQEQSGFGQ 640
             V F V     R+ +EQ +PRLRE+LA+QG+QL D++V Q   G++Q   G++  G G 
Sbjct: 480 TQVQFHVTQTQTRDLVEQAIPRLRELLAEQGMQLTDSNVSQ--GGKEQGGNGEQGEGVGH 537

Query: 641 S-ARNERLNSEENLDTDIKLDLNVATKRDGISYYA 674
             +  + +++EE+L     +  N  + R GI YYA
Sbjct: 538 GLSEMDEISAEESL----LVSNNATSYRSGIDYYA 568