Pairwise Alignments

Query, 674 a.a., flagellar hook-length control protein FliK from Vibrio cholerae E7946 ATCC 55056

Subject, 579 a.a., flagellar hook-length control protein (RefSeq) from Shewanella sp. ANA-3

 Score =  111 bits (277), Expect = 1e-28
 Identities = 154/597 (25%), Positives = 246/597 (41%), Gaps = 70/597 (11%)

Query: 121 APSLEKGEAISTKVAPVKQDEQGANAPIPASLAKWVTNAESIDDQPVSGELQRKTAQAMS 180
           APS  K  A S+K   + QD    +    A+LA   + + +    PVS ++  K+A+A +
Sbjct: 10  APSA-KNSASSSKA--LTQDTNSED--FSAALASVTSVSSTSTKTPVSQDVAVKSAKAEA 64

Query: 181 EGDELLGRLQEANQALIKTNGKILPAQHGQALDSQHPDRIRNATPPEAVLPIESATAISN 240
             D+      EA+ +LI        AQ G A      + ++ A  P   LP+E+      
Sbjct: 65  STDDT-NTGDEADISLIF-------AQIGMA------NEMKQAAAPGESLPLEADITAMK 110

Query: 241 RALSTSADLD-AAVSDSAATE----DEIAQDEWMASALMGGALVGGLSGASLAAANTVHA 295
            A STS  +D  + +DS+  +    +E+A+    ++  +G A V   S    + +    +
Sbjct: 111 DADSTSLLVDDQSQADSSIVDGTFSNEMAKFVEASNTSIGNAKVDVSSETPDSESVASKS 170

Query: 296 EPVEGAMLEGMPLTQTFA--NTAALASPSAEVSEALAASSQALKATPLTQSALNPASIMA 353
                A +    L Q  +  N A +A   +   + LA    AL A         P + + 
Sbjct: 171 VGQNTAQVTAQLLQQQVSQQNAADVADTESVEPQILAVDVDALVAAATVAETDTPGTSV- 229

Query: 354 DEGLNQSTSATETGK-----VVIPWGTQMPTDNELAALTPELKAMLEEGGKA-------- 400
           D+ L    +A  TG      V  P    +P + E      EL A  E G KA        
Sbjct: 230 DDSLLIDDAAILTGLRSEKFVKPPENHILPIEGEPLLGAKELGAT-EIGAKAINVSTQPA 288

Query: 401 -KAPVPNALAQSVAQGLTPAHLAAQQTGTTALPMNPTAATPID----IAALAPQTVAVNP 455
            K   P ++             A+  +    L +N  AAT  +    +   A   V+   
Sbjct: 289 DKVLAPQSMVSQAVDNQISIKAASASSDAGTLQVNTAAATNTNDLNTLGTNAATNVSGTT 348

Query: 456 MLNPAATV-NPELAASSAML----AALGGRALAGSDERRAVSESGQEDLAQQIAAAAGQG 510
            + P+ T  NP  A  SA      A L     A  D R A   SG E+   +      + 
Sbjct: 349 AIEPSFTDDNPSRAEISAGFLLKDAKLAVTLDAQQDSRVAALSSGSEEADSEFKPVEFKA 408

Query: 511 TAQNQALNRAESQLVQTNATPVPLNKEMAA-DQLAERVQM-----------MMSKNLKNI 558
                +L    +Q        + L + +   +Q+ E +Q            M+S+ ++  
Sbjct: 409 VPSLHSLATPATQRQDIPQVQLSLRQGVETQNQMQEMIQRFSPVMKQQLVTMVSQGIQQA 468

Query: 559 DIRLDPPELGRMHIRMNMQGDGATVHFTVANQHAREALEQTMPRLREMLAQQGVQLGDTS 618
           +IRLDPPELG M +++ + GD   V F V     R+ +EQ +PRLRE+L +QG+QL D+ 
Sbjct: 469 EIRLDPPELGHMLVKVQVHGDQTQVQFHVTQSQTRDVVEQAIPRLRELLQEQGMQLADSH 528

Query: 619 VQQQSAGQQQRYTGQEQSGFGQSARNERLNSEENLDTDIKLDLNVATK-RDGISYYA 674
           V Q   GQ++      + GFG++  +   N ++    ++ L LN AT    GI YYA
Sbjct: 529 VSQGDHGQRR------EGGFGEAGGSSGGNVDDFSAEELDLGLNQATSLNSGIDYYA 579