Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., flagellar motor switch protein FliM from Pseudomonas fluorescens FW300-N2E3

 Score =  391 bits (1005), Expect = e-113
 Identities = 189/319 (59%), Positives = 250/319 (78%), Gaps = 2/319 (0%)

Query: 3   DLLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERFAR 62
           DLLSQDEIDALLHGVD    + +   + G S  ++D +SQDRIVRGRMPTLE+INERFAR
Sbjct: 5   DLLSQDEIDALLHGVDDGLVQTDNAAEPG-SVKSYDLTSQDRIVRGRMPTLEMINERFAR 63

Query: 63  HLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLV 122
           + RIS+FNMLR++A+V++ GVQ+MKFGEY ++LYVPTSLN+V+ +PL+GTAL  ++A+LV
Sbjct: 64  YTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLV 123

Query: 123 FILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLDSE 182
           F LV+NFFGGDGR HA+IEGREFTPTE RV++++L+  F D KEAW  +M V FEY++SE
Sbjct: 124 FKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEVNFEYINSE 182

Query: 183 VNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDV 242
           VNP+MANIV P+E +VVS+FH+E+DGGGGD H+ MPYSM+EP+RE+LDAG QSD  + D 
Sbjct: 183 VNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDE 242

Query: 243 RWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTYRV 302
           RW  ALR++++DV V     +    + LRD++ +Q GDVIP+ MPE  +M    +P ++V
Sbjct: 243 RWVNALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDVIPVDMPEEMIMRANGVPAFKV 302

Query: 303 KMGRSGEKLAVQVSEKIKR 321
           KMG     LA+QV E I+R
Sbjct: 303 KMGSHKGNLALQVIEPIER 321