Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., flagellar motor switch protein FliM from Pseudomonas stutzeri RCH2

 Score =  395 bits (1016), Expect = e-115
 Identities = 196/322 (60%), Positives = 254/322 (78%), Gaps = 6/322 (1%)

Query: 3   DLLSQDEIDALLHGVDS--VDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERF 60
           DLLSQDEIDALLHGVD   VD E +  P S  S   +D +SQDRIVRGRMPTLE+INERF
Sbjct: 5   DLLSQDEIDALLHGVDDGLVDTESDSEPGSIKS---YDLTSQDRIVRGRMPTLEMINERF 61

Query: 61  ARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEAR 120
           AR+ RIS+FN+LR++A+VS+ GVQ+MKFGEY ++LYVPTSLN+V+ +PL+GTAL  ++A+
Sbjct: 62  ARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAK 121

Query: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLD 180
           LVF LV+NFFGGDGR HA+IEGREFTPTE RV++++L   FAD KEAW  V+ V FEY++
Sbjct: 122 LVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAWHAVLDVNFEYVN 180

Query: 181 SEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMET 240
           SEVNP++ANIVSP+EV+VVS+FH+E+D GGGD H+ MPYSM+EPIRE+LDAG QSD  + 
Sbjct: 181 SEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIREMLDAGFQSDVSDQ 240

Query: 241 DVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTY 300
           D RW  ALRE+I+DV V     ++   + LRD++ +Q GDVIP++MPE  +M    +P +
Sbjct: 241 DERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPEDMIMRANGMPAF 300

Query: 301 RVKMGRSGEKLAVQVSEKIKRP 322
           +VK+G     LA+QV E + RP
Sbjct: 301 KVKLGAHKGNLALQVLEPVVRP 322