Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., flagellar motor switch protein FliM from Azospirillum brasilense Sp245

 Score =  147 bits (371), Expect = 4e-40
 Identities = 88/328 (26%), Positives = 169/328 (51%), Gaps = 10/328 (3%)

Query: 2   TDLLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERFA 61
           T +L+QDEID+LL G D     +      G ++      +   +   R+P LE++ +R  
Sbjct: 39  TRVLNQDEIDSLL-GFDQGGAGD------GDNSGIMALVNSALVNYERLPMLEVVFDRLV 91

Query: 62  RHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARL 121
           R +  SL N      EVS++ +  ++FG+Y N++ +P  L++ +        L+ +++ L
Sbjct: 92  RMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLSVFKAEEWDNYGLMVVDSAL 151

Query: 122 VFILVENFFGGD-GRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLD 180
           ++ +V+   GG  G    RIEGR +T  ER +++ ++ +V +D   A+ P+  V F +  
Sbjct: 152 IYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFRFDR 211

Query: 181 SEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMET 240
            E NP  A I  P    V+    ++++  GG   +++PY+ +EP+RELL      +K   
Sbjct: 212 LETNPRFATIARPANAAVLVKLRIDMEDRGGRLELMIPYATLEPVRELLLQMFMGEKFGR 271

Query: 241 DVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVE--ELP 298
           D  W T L  E++   V+    L E+ + L D++  +VG  I +       + +   ++ 
Sbjct: 272 DSIWETHLASELLVTDVDISAVLDEVTMTLHDVLNWRVGTRILLNATPDGTIELRCGDVS 331

Query: 299 TYRVKMGRSGEKLAVQVSEKIKRPDVVK 326
            ++ +MGR G  +AV++  ++ + +V++
Sbjct: 332 MFQGRMGRKGGHIAVRIERELPKQEVMR 359