Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., Flagellar motor switch protein FliM from Pseudomonas syringae pv. syringae B728a

 Score =  382 bits (981), Expect = e-111
 Identities = 183/319 (57%), Positives = 250/319 (78%), Gaps = 2/319 (0%)

Query: 3   DLLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERFAR 62
           DLLSQDEIDALLHGVD    + +   + G S  ++D +SQDRIVRGRMPTLE+INERFAR
Sbjct: 5   DLLSQDEIDALLHGVDDGMVQTDNNSEPG-SVKSYDLTSQDRIVRGRMPTLEMINERFAR 63

Query: 63  HLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLV 122
           + RIS+FN+LR++A+V++ GVQ+MKFGEY ++LYVPTSLN+ + +PL+GTAL  ++A+LV
Sbjct: 64  YTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLV 123

Query: 123 FILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLDSE 182
           F LV+NFFGGDGR HA+IEGREFTPTE RV++++L   F D KEAW  +M V FEY++SE
Sbjct: 124 FKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVNFEYINSE 182

Query: 183 VNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDV 242
           VNP+MANIV P+E +V+S+FH+E+DGGGGD H+ MPYSM+EPIRE+LDAG QSD  + D 
Sbjct: 183 VNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDE 242

Query: 243 RWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTYRV 302
           RW  AL+E+++DV V     + +  + LRD++ ++ GDVIP+++ +  VM    +P+++V
Sbjct: 243 RWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSDSLVMRANGVPSFKV 302

Query: 303 KMGRSGEKLAVQVSEKIKR 321
           K+G    K+A+QV E I R
Sbjct: 303 KLGSHKGKMALQVIEPIAR 321