Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., flagellar motor switch protein FliM (NCBI) from Rhodospirillum rubrum S1H

 Score =  161 bits (407), Expect = 3e-44
 Identities = 99/321 (30%), Positives = 168/321 (52%), Gaps = 10/321 (3%)

Query: 4   LLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERFARH 63
           +L+QDEID+LL   ++ D   +   KSG  A      S   +   R+P LE++ +R  R 
Sbjct: 68  VLNQDEIDSLLGFSEAEDSGTD---KSGIQA----IISTALVSYERLPMLEVVFDRLVRM 120

Query: 64  LRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVF 123
           +  SL N      EVS++ +Q  +FG+Y N++ +P  L++ +        L+T+++ +++
Sbjct: 121 MSTSLRNFTSDNVEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIY 180

Query: 124 ILVENFFGGD-GRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLDSE 182
            +V+   GG  G    RIEGR +T  ER +++ L+ +V AD   A+ P+  V F +   E
Sbjct: 181 SIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVTFRFDRLE 240

Query: 183 VNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDV 242
            NP  A I  P+   +V+   ++++  GG   M++PY+ +EP+RELL      +K   D 
Sbjct: 241 TNPRFATISRPSNAAIVAKLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDS 300

Query: 243 RWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIK-MPEHAVMF-VEELPTY 300
            W T L EE+    V     L E+ + L  ++ ++VG  I     P+  V     ++P +
Sbjct: 301 IWETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQLRCGDVPMF 360

Query: 301 RVKMGRSGEKLAVQVSEKIKR 321
             KMGR G+ +A++V  K  R
Sbjct: 361 DGKMGRKGQNIAIRVDSKHNR 381