Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., flagellar motor switch protein FliM from Rahnella sp. WP5

 Score =  240 bits (613), Expect = 3e-68
 Identities = 119/322 (36%), Positives = 198/322 (61%), Gaps = 6/322 (1%)

Query: 4   LLSQDEIDALLHGVDSVDEEEEELPKSGPSATN-----FDFSSQDRIVRGRMPTLELINE 58
           +LSQ EIDALL+G    D        +  +A++     FD ++Q R+VR R+  LE+INE
Sbjct: 5   ILSQAEIDALLNGDSDSDNASNTAAAAKTAASDDGVKPFDPTTQRRVVRERLQALEIINE 64

Query: 59  RFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTME 118
           RFARH R+ LFN+LR++ ++++  +++  + ++   L VPT+LN++  +PL+GTAL    
Sbjct: 65  RFARHFRMGLFNLLRRSPDITVGAIKIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFA 124

Query: 119 ARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEY 178
             LVFI V+N FGGDGR+  ++EGREFT TE+RVI+ +L++    Y++AWS V  +  EY
Sbjct: 125 PSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVIKRMLRLALDAYEDAWSGVYKLSVEY 184

Query: 179 LDSEVNPSMANIV-SPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDK 237
           + +E+     NI  SP +++V + FHVE+    GDF++ +P+SM+EP+RELL      + 
Sbjct: 185 VRAELQIKFTNITSSPNDIVVTTPFHVEIGALSGDFNICIPFSMIEPLRELLTNPPVENS 244

Query: 238 METDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEEL 297
              + +W   L  ++    +    N +E+ + L  +++L+ GDV+PI+ P+  +  V+ +
Sbjct: 245 RNEESQWRENLVHQVQQSELELVANFVEIPLRLSQILKLKPGDVLPIEKPDRLIAHVDGV 304

Query: 298 PTYRVKMGRSGEKLAVQVSEKI 319
           P    + G   E+ A++V   I
Sbjct: 305 PVLTSQYGTLNEQYALRVEHLI 326