Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., flagellar motor switch protein FliM (RefSeq) from Shewanella loihica PV-4

 Score =  503 bits (1296), Expect = e-147
 Identities = 243/334 (72%), Positives = 291/334 (87%), Gaps = 3/334 (0%)

Query: 1   MTDLLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERF 60
           M+DLLSQDEIDALLHGVD V+EEE         A  +DFSSQDRIVRGRMPTLE++NERF
Sbjct: 1   MSDLLSQDEIDALLHGVDDVEEEEVS---DALDARAYDFSSQDRIVRGRMPTLEIVNERF 57

Query: 61  ARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEAR 120
           ARHLRIS+FNM+R+ AEVSINGVQM+KFGEY +TL+VPTSLNMVRF PLKGTAL+TMEAR
Sbjct: 58  ARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEAR 117

Query: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLD 180
           LVFILV+NFFGGDGR+HA+IEGREFTPTERR++QLLLKI+F DYKEAW+PVM VEF+YLD
Sbjct: 118 LVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVEFDYLD 177

Query: 181 SEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMET 240
           SEVNP+MANIVSPTEV+VVSSFH+EVDGGGGDFH+ MPYSM+EPIRELLDAGVQSD  +T
Sbjct: 178 SEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDT 237

Query: 241 DVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTY 300
           D+RWS AL++EIMDV V     ++E +I+L+D+M  + GD+IP++MPE+ V+ VE+LPTY
Sbjct: 238 DMRWSQALKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPEYIVLRVEDLPTY 297

Query: 301 RVKMGRSGEKLAVQVSEKIKRPDVVKTDLAFLGK 334
           R K+GRS E LA+ + EKI RP+ VKT+L  + K
Sbjct: 298 RCKLGRSRENLALNIREKIPRPETVKTELQLVTK 331