Pairwise Alignments

Query, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

 Score =  147 bits (370), Expect = 3e-40
 Identities = 82/199 (41%), Positives = 130/199 (65%), Gaps = 7/199 (3%)

Query: 106 LGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIMAPVFNQINE 165
           +  +P ++I+ ++F +I +V++I R A+G+QQ P N  +  IAL  T FIMAPV + I E
Sbjct: 18  ISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAE 77

Query: 166 QAVQPYLNEQIT-ARQAFDL-AQEPLKAFMLKQTRVNDLETFVEMSGAQ--VTAPEQVS- 220
           Q  +  L+   T A Q   L A +PL+AFM + T  + L   +E +         EQ S 
Sbjct: 78  QLKEQPLDFSSTEALQGSALNAVKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQASR 137

Query: 221 --MAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLM 278
             + +LIPAF+ SEL+  FQ+GF++++PF++IDL+V+++L+A+GM M++PM +SLP KL+
Sbjct: 138 DDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLL 197

Query: 279 LFVLVDGWNLILSTLAGSF 297
           +FVLV GW  +L +L  S+
Sbjct: 198 IFVLVQGWTQLLDSLFYSY 216