Pairwise Alignments

Query, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

 Score =  135 bits (340), Expect = 8e-37
 Identities = 77/216 (35%), Positives = 122/216 (56%), Gaps = 18/216 (8%)

Query: 96  NLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFI 155
           ++ ++AL+     LP +V   T + +  +V  I+R A+GLQQ PSN  +  IAL L  F+
Sbjct: 3   DVSLIALLAFASLLPFLVAAGTCYLKFSIVFVIVRNALGLQQVPSNMALNAIALMLAVFV 62

Query: 156 MAPVFNQINEQAVQPYLNEQIT---ARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSGAQ 212
           M PV  Q ++     Y  E +         + A+  L ++     +  D E  +    AQ
Sbjct: 63  MTPVVKQGHDY----YKTEAVAFTDIESVVNFAENGLGSYKDYLRKYTDPELALFFERAQ 118

Query: 213 VTAPEQ-----------VSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAM 261
               E             S+  L+PA+  SE+K+AF+IGF L+LPF+I+DLV++S+L+A+
Sbjct: 119 AVQDETDADWPVDEELAPSLFSLLPAYALSEIKSAFKIGFYLYLPFVIVDLVISSILLAL 178

Query: 262 GMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
           GMMM+SP+I+S+P KL+LFV +DGW L+ + L   +
Sbjct: 179 GMMMMSPVIISVPIKLVLFVALDGWALLSTGLVKQY 214