Pairwise Alignments

Query, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., type III secretion protein HrcR from Pseudomonas syringae pv. syringae B728a

 Score =  144 bits (363), Expect = 2e-39
 Identities = 80/213 (37%), Positives = 135/213 (63%), Gaps = 12/213 (5%)

Query: 95  INLQILAL-MTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 153
           IN  +LAL +  L  +P ++I+ T+F +I + + I R A+G+QQ P N  + GIAL  T 
Sbjct: 6   INPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATM 65

Query: 154 FIMAPVFNQINEQAVQP--YLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSGA 211
           F+MAPV + I ++  +    L+     + +  +  EPL+ FM + T  + +   +E    
Sbjct: 66  FVMAPVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLE--NT 123

Query: 212 QVTAPEQVS-------MAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMM 264
           Q   P++++       + + IPAF+ SEL+  F+IGF++++PF++IDL+V+++L+A+GM 
Sbjct: 124 QRMWPKEMADQASKDDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQ 183

Query: 265 MLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297
           M+SPM +SLP KL+LFVLV GW+ +L +L  S+
Sbjct: 184 MVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSY 216