Pairwise Alignments

Query, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

Subject, 216 a.a., type III secretion system protein, YscR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  150 bits (380), Expect = 2e-41
 Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 12/200 (6%)

Query: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156
           L  +A M +LG  P  ++++TS+ +IVVV S++R A+G+QQ P   V+ G+A+ L+ FIM
Sbjct: 7   LYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIM 66

Query: 157 APVFNQINEQAVQPYLNEQITARQAF---DLAQEPLKAFMLKQTRVNDLETFVEMSGAQV 213
           APV +   +      +      R+     D A  PL+ F+  +   +D    V MS A+ 
Sbjct: 67  APVASGTLDLMQNMKIGPDPAPREIIALLDKASPPLRGFL--ERNADDKVVTVFMSTAKR 124

Query: 214 TAP-------EQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMML 266
             P        + ++ +LIP+F  SEL  AFQIGF+L+LPF+ IDLV++++L+AMGMMM+
Sbjct: 125 IWPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMV 184

Query: 267 SPMIVSLPFKLMLFVLVDGW 286
           SPM +SLPFKL+LFV +DGW
Sbjct: 185 SPMTISLPFKLLLFVTLDGW 204