Pairwise Alignments

Query, 89 a.a., flagellar biosynthetic protein FliQ from Vibrio cholerae E7946 ATCC 55056

Subject, 84 a.a., Type III secretion inner membrane protein (YscS,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

 Score = 45.4 bits (106), Expect = 1e-10
 Identities = 24/76 (31%), Positives = 42/76 (55%)

Query: 9  LFKESLWLVLIMVCAIIIPSLLVGLVVAIFQAATSINEQTLSFLPRLIITLLALMFFGHW 68
          LFKE + LV+++    +I +++VG++ ++ QA   I +QTL F  +L+   L L+  G W
Sbjct: 6  LFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLVTGRW 65

Query: 69 MTQILMDFFYSMIERM 84
          +   L+       E M
Sbjct: 66 IGVELLGLLRRAFEMM 81