Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., Flagellar biosynthesis protein FliR from Pseudomonas fluorescens FW300-N2E2

 Score =  196 bits (499), Expect = 3e-55
 Identities = 105/247 (42%), Positives = 151/247 (61%), Gaps = 6/247 (2%)

Query: 11  FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
           ++A++  P  R+ A+LM M V G   VP RVRLY  LA+T  + P +P +P  +  L L 
Sbjct: 14  WVASFILPLFRVTAVLMSMPVFGTTLVPTRVRLYFALAITVVIAPGLPPMPP-VNALDLS 72

Query: 71  GFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLF 130
           G M+  EQI+IG  MG   Q   Q FV+ GQI+ +Q  + FASM+DP NG NT ++GQ  
Sbjct: 73  GLMLIAEQILIGALMGFSLQLFFQAFVVAGQIISIQMGMAFASMIDPTNGVNTAVIGQFL 132

Query: 131 MLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLS 190
            +L TL FL  +GHL + +++  SF ++P+GS  L    F E+A  LG +  A++ + L 
Sbjct: 133 TMLVTLLFLAMNGHLVVFEVLTESFTTMPVGSALLVN-HFWEIAGKLGWVLGAAMVLVLP 191

Query: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEAEE 250
            I ALL VN++FGVMTRAAPQLNIFS+GF   L++G+++ W  +  +   Y    Q    
Sbjct: 192 AITALLIVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMVIFWVSLGDILNQY----QPLAT 247

Query: 251 QVCRLIR 257
           Q  +L+R
Sbjct: 248 QALQLLR 254