Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

 Score = 68.6 bits (166), Expect = 1e-16
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 8/199 (4%)

Query: 39  ARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVM 98
           AR  + + +AL F     +P    D   L+  G M+   ++ IGV +G++  +   +   
Sbjct: 42  ARQAVIVLVALGFWAYVGVPTPALDS--LAFLGLML--REVSIGVLLGVLLCWPFWVLHA 97

Query: 99  LGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSL 158
           +G ++  Q     +S VDPANG +T  L     L A   +L   G L M++ V  S++  
Sbjct: 98  MGNLIDNQRGAMLSSTVDPANGVDTSELANFLQLFAAAVYLEGGGMLLMLETVAQSYRI- 156

Query: 159 PIGSGSLTTVDFRELALWLGIMFKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLG 218
                +   +    L   L ++   +L +S   +  LL      G+++R APQ+N FS+ 
Sbjct: 157 -CAPANDCAIHLSALHALLDVLVSKTLVISAPVVATLLVSEALLGLLSRYAPQMNAFSVS 215

Query: 219 FSFALLVGL--LLCWYIVH 235
            +   LV L  L+ ++ VH
Sbjct: 216 LTVKSLVALVVLMLYFGVH 234