Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., Flagellar biosynthesis pathway, component FliR from Pseudomonas stutzeri RCH2

 Score =  101 bits (251), Expect = 2e-26
 Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 34/228 (14%)

Query: 5   ASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDI 64
           A   L  +  Y+WP+ RI A+  +  +   + +  RVR+ L LALT              
Sbjct: 3   AGQYLQSLLAYWWPFCRIMAVFSLAPMFNHKAISVRVRILLALALT-------------- 48

Query: 65  ALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG-QNT 123
                         +V+G+A+ +V      +F ++G ++  Q  L  A   DP NG  + 
Sbjct: 49  --------------LVLGLALLLV----FTVFTLIGDVVSTQLGLSMAVFNDPMNGVSSA 90

Query: 124 PLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKA 183
            ++ QL+ +L  L F   DGHL  + ++  SF   PIGSG L     + +A  +  +  A
Sbjct: 91  SIIYQLYFILLALLFFAVDGHLVTVSIIYQSFVYWPIGSG-LFYDGLQTIAWSMAWVISA 149

Query: 184 SLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCW 231
           +L ++L  +  +  V   FG++ R +P +N+FSLGF  A+L GL L +
Sbjct: 150 ALLIALPIVFCMTLVQFCFGLLNRISPAMNLFSLGFPMAILAGLSLIY 197