Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., flagellar biosynthetic protein FliR from Pseudomonas stutzeri RCH2

 Score =  210 bits (535), Expect = 2e-59
 Identities = 110/238 (46%), Positives = 157/238 (65%), Gaps = 2/238 (0%)

Query: 11  FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
           ++  +  P  RIAA+LM M + G + VP RVRLYL LA+   ++P +P +P  +  LSL 
Sbjct: 12  WVGQFLLPLFRIAALLMSMPIIGTQLVPVRVRLYLALAIALVLVPTLPPMPV-VESLSLA 70

Query: 71  GFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLF 130
             ++  EQ++IGV +G V Q    +F++ GQ+L MQ  LGFASMVDPANG + P+LGQ F
Sbjct: 71  SLLLIAEQLLIGVMLGFVLQLFFHVFIVSGQMLAMQMGLGFASMVDPANGISVPVLGQFF 130

Query: 131 MLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLS 190
            +L  L FL  +GHL +++++  SF +LP+G G L+T  F E+A  LG +  A L + L 
Sbjct: 131 NMLVILLFLSVNGHLVVLEILAESFVTLPVG-GGLSTNHFWEVAGKLGWVLGAGLLLVLP 189

Query: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEA 248
            I ALL VNL+FG+MTRAAPQLNIFS+GF   L++GL++ W  +  ++  Y I+  EA
Sbjct: 190 AITALLVVNLAFGLMTRAAPQLNIFSIGFPLTLVLGLIIVWIGMADIFAQYQIFVSEA 247