Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., Flagellar biosynthesis protein FliR from Pseudomonas syringae pv. syringae B728a

 Score =  206 bits (523), Expect = 5e-58
 Identities = 106/247 (42%), Positives = 158/247 (63%), Gaps = 2/247 (0%)

Query: 11  FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
           ++A++  P  RI A+LM M + G   VP RVR+YL +A+T  V PA+PA+P  +  L L 
Sbjct: 15  WVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPP-VQALDLS 73

Query: 71  GFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLF 130
             ++  EQI+IG  MG+  Q    IFV+ GQI+  Q  +GFASMVDP NG ++  +GQ F
Sbjct: 74  ALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFF 133

Query: 131 MLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLS 190
            +L TL FL  +GHL +++++V SF ++P+GSG L   +F ELA  LG +  + L + L 
Sbjct: 134 TMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVN-NFWELANGLGWVLASGLRLVLP 192

Query: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEAEE 250
            I ALL +N++FGVMTRAAPQLNIFS+GF   L++G+++ W  +  +   Y     +A +
Sbjct: 193 AITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQYQPIATQALQ 252

Query: 251 QVCRLIR 257
            +  ++R
Sbjct: 253 ALRDMVR 259