Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 250 a.a., flagellar biosynthesis protein FliR from Sinorhizobium meliloti 1021

 Score = 67.4 bits (163), Expect = 3e-16
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 16  FWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAI-PAVPSDIALLSLQGFMI 74
           F  + RI   +M+M       VP ++RL++ +AL+ A++P +   +   +         +
Sbjct: 13  FAAFCRIGGCVMIMPGFSTARVPMQIRLFIAVALSMAILPIMWTDIYPQVTGKGHDYLYL 72

Query: 75  TFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFAS------MVDPANGQNTPLLGQ 128
              +  IG  +G+V ++ V      G  + M   +GF S      + D A  Q T ++G 
Sbjct: 73  VATETAIGAVIGLVARYYVLGLQFAGTAITM--LMGFGSPPAADVLEDTAENQLTSMIG- 129

Query: 129 LFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVS 188
            F  L  LF L  D H  + + +  S++ +PIG+G         L   LG  F   L ++
Sbjct: 130 -FAGLMILFML--DFHHVIFEAIAQSYRVMPIGAGFDPQGTLITLTNSLGQTFMIMLRLA 186

Query: 189 LSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCW 231
              +I  L  N++ G++ + APQ+ ++ +   + ++ GL L +
Sbjct: 187 SPFVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLY 229