Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., flagellar biosynthesis protein FliR (RefSeq) from Shewanella amazonensis SB2B

 Score =  255 bits (652), Expect = 6e-73
 Identities = 126/260 (48%), Positives = 176/260 (67%), Gaps = 1/260 (0%)

Query: 1   MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV 60
           M+     +++ I  Y WP  RI+AM MVM V GA   P RVRL L +A+TFAV P +P +
Sbjct: 1   MDVLLDTLMETIKAYTWPLFRISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPM 60

Query: 61  PSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG 120
           P    L +L    I+ +Q++IGVAMG+V   ++QIFV+ GQI+GMQ+SLGF+ MVDP +G
Sbjct: 61  PQG-ELFALSSVFISAQQVLIGVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSG 119

Query: 121 QNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIM 180
           Q TP+LG  F+LLATL FL  DGHL MI+++V SF +LP+    +T  ++  LALW   M
Sbjct: 120 QQTPVLGNFFLLLATLIFLAVDGHLTMIRMLVMSFDTLPVSMTGITLANYHSLALWGSYM 179

Query: 181 FKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH 240
           F A+L +SLS I+ALL +NLSFGVMTRAAPQLNIF++GF   ++ GL + W  +  + +H
Sbjct: 180 FGAALTMSLSAIVALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSH 239

Query: 241 YDIYWQEAEEQVCRLIRLNC 260
           +   W+ A+  +C +  + C
Sbjct: 240 FGEIWEAAQVLLCDITHIQC 259