Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., flagellar biosynthetic protein FliR from Rhodopseudomonas palustris CGA009

 Score = 96.7 bits (239), Expect = 4e-25
 Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 4/219 (1%)

Query: 13  ANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGF 72
           A +   + RI AM+M+M   G   +P RV+L + L LT  ++P +      I + SL   
Sbjct: 13  ATFMLVFARIGAMVMLMPTFGESNIPTRVKLSIALLLTLIMLP-LHRSAYQIDMSSLTPL 71

Query: 73  MITF-EQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFM 131
           ++   ++I +G+ +G   +  +    + G ++  Q  LGF S VDP  GQ   ++G    
Sbjct: 72  LVLMLQEIAVGIVLGATARVTLSALQVAGAVIAQQLGLGFVSAVDPTQGQQGVVVGNFLT 131

Query: 132 LLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELAL-WLGIMFKASLAVSLS 190
           +L       +D H  +IQ +  S+K    G   L T D   LA       FK  L +S  
Sbjct: 132 MLGVTLLFATDMHYLVIQALSDSYKVFAPGE-LLHTGDVAALATKAFAAAFKLGLQLSAP 190

Query: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLL 229
            ++  L  N+  GV+ R  PQ+ ++ +G   ++++G ++
Sbjct: 191 FLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIVIGFIV 229