Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., flagellar type III secretion system protein FliR from Pseudomonas fluorescens SBW25-INTG

 Score =  191 bits (484), Expect = 2e-53
 Identities = 101/231 (43%), Positives = 143/231 (61%), Gaps = 2/231 (0%)

Query: 11  FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
           ++A++  P  RI AMLM M V G   VP R+RLY  +A+T  ++P +P +P  +  L L 
Sbjct: 15  WVASFILPLFRITAMLMAMPVFGTTLVPRRIRLYFAVAITVVLVPGLPPMPP-VNALDLS 73

Query: 71  GFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLF 130
             M+  EQ++IG  +G   Q   Q FV+ GQI+ +Q  +GFASMVDP NG +  ++GQ  
Sbjct: 74  ALMLIAEQVLIGTLLGFSLQLFFQAFVIAGQIISIQMGMGFASMVDPTNGVSAAVIGQFL 133

Query: 131 MLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLS 190
            +L TL FL  +GHL   +++  SF +LP+GSG L    F E+   LG +  ASL + L 
Sbjct: 134 TMLVTLLFLAMNGHLVAFEVLTESFTTLPVGSG-LVVNHFWEVVGRLGWVLGASLLLVLP 192

Query: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHY 241
            I ALL VN++FGVMTRAAPQLNIFS+GF   L++G+ + W  +  +   Y
Sbjct: 193 AITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADILNQY 243