Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., flagellar biosynthetic protein FliR from Phaeobacter inhibens DSM 17395

 Score = 82.0 bits (201), Expect = 1e-20
 Identities = 52/215 (24%), Positives = 102/215 (47%), Gaps = 12/215 (5%)

Query: 19  YTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMITFEQ 78
           + RI AM+ V+   G ++VPAR++L + LA T  V PA+P +P   + L      +   +
Sbjct: 25  FLRIGAMVSVLPAFGEKYVPARIKLAISLAFTLIVAPALPILPPPASPLHYGS--LALSE 82

Query: 79  IVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLATLFF 138
            V+G+A+GM  +  V    + G I    +SL  A ++     +  P +G + ++      
Sbjct: 83  AVVGLALGMAIRMFVHAIQIAGTIAAQSTSL--AQVLGGIGAEPMPAIGAVLLISGLALA 140

Query: 139 LVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALW----LGIMFKASLAVSLSGIIA 194
           ++   H+++ + +++S+   P+G     +     L+ W    +   F    +++   +I 
Sbjct: 141 VMLGLHIRVAEFMIYSYMMFPVGEFPSAS----GLSDWGVHRVSRSFAMGFSLAAPFLIG 196

Query: 195 LLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLL 229
            +  NL+ GV+ RA P L +  +G       GL +
Sbjct: 197 SMVYNLTLGVINRAMPALMVAFVGAPVVTFGGLAI 231