Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., flagellar biosynthesis protein FliR (RefSeq) from Shewanella loihica PV-4

 Score =  261 bits (668), Expect = 8e-75
 Identities = 125/260 (48%), Positives = 181/260 (69%), Gaps = 1/260 (0%)

Query: 1   MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV 60
           ME   S ++  ++ Y WP  R+++MLMVM V GA   P RVRL L +A+TFA+ P +P V
Sbjct: 1   MEILLSTIMQTLSAYMWPLFRVSSMLMVMAVFGANTTPTRVRLLLSVAITFAIAPMLP-V 59

Query: 61  PSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG 120
            +++ L SL    +T +QI+IGVAMG VT  ++Q FV+ GQI+GMQ+SLGFASMVDP +G
Sbjct: 60  NTEVELFSLGAVFVTVQQILIGVAMGFVTLLIMQTFVLTGQIIGMQTSLGFASMVDPGSG 119

Query: 121 QNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIM 180
           Q TP++G  F+LL T+ FL  DGHL MI+++V SF ++P+    ++   +R LA W   M
Sbjct: 120 QQTPVIGNFFLLLTTMIFLAVDGHLVMIRMLVASFDTIPVSMQGISIASYRRLAEWGAYM 179

Query: 181 FKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH 240
           F A+L +S+S I+ALL +NLSFGVMTRA+PQLNIF++GF   ++ GL++ W  +  +  H
Sbjct: 180 FGAALTMSISAIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLIILWLTLTPIMAH 239

Query: 241 YDIYWQEAEEQVCRLIRLNC 260
           +D  W+ A+  +C L++L C
Sbjct: 240 FDEVWRSAQLLLCDLVQLQC 259