Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., flagellar biosynthetic protein FliR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  273 bits (699), Expect = 2e-78
 Identities = 140/260 (53%), Positives = 180/260 (69%), Gaps = 1/260 (0%)

Query: 1   MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV 60
           ME     ++  IA+Y WP  R+A+MLMVM V GA   P RVRL L +A+T A+ P +P V
Sbjct: 1   MELLLDTLMQTIASYMWPLFRVASMLMVMVVFGAATTPTRVRLLLAIAITLAIAPVLPPV 60

Query: 61  PSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG 120
             D  L SL    IT +QI+IGVAMG VTQ ++Q FV+ GQI+GMQ+SLGFASMVDP++G
Sbjct: 61  -KDAQLFSLSAVFITAQQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPSSG 119

Query: 121 QNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIM 180
           Q TP++G  F+LLATL FL  DGHL MI+++V SF +LPI +  LT   +R LA W   M
Sbjct: 120 QQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFDTLPISNVGLTLTSYRSLAEWGSYM 179

Query: 181 FKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH 240
           F A+L +SLS IIALL VNLSFGVMTRAAPQLNIFS+GF   ++ GLL+ W  +  +  H
Sbjct: 180 FGAALTMSLSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAH 239

Query: 241 YDIYWQEAEEQVCRLIRLNC 260
           +D  W  A+  +C ++ L C
Sbjct: 240 FDEVWASAQLLLCDILGLQC 259