Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., flagellar biosynthesis protein FliR (RefSeq) from Shewanella sp. ANA-3

 Score =  269 bits (688), Expect = 4e-77
 Identities = 137/260 (52%), Positives = 178/260 (68%), Gaps = 1/260 (0%)

Query: 1   MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV 60
           ME     ++  IA+Y WP  R+ +MLMVM V GA   P RVRL L + +T A+ P +P V
Sbjct: 1   MELLLDTLMQTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPV 60

Query: 61  PSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG 120
             D  L SL    IT +QI+IGVAMG VTQ ++Q FV+ GQI+GMQ+SLGFASMVDP +G
Sbjct: 61  -KDAELFSLSAVFITAQQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSG 119

Query: 121 QNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIM 180
           Q TP++G  F+LLATL FL  DGHL MI+++V SF++LPI +  LT   +R LA W   M
Sbjct: 120 QQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYM 179

Query: 181 FKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH 240
           F A+L +SLS IIALL VNLSFGVMTRAAPQLNIFS+GF   ++ GLL+ W  +  +  H
Sbjct: 180 FGAALTMSLSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAH 239

Query: 241 YDIYWQEAEEQVCRLIRLNC 260
           ++  W  A+  +C ++ L C
Sbjct: 240 FEEVWASAQLLLCDILGLQC 259