Pairwise Alignments

Query, 376 a.a., flagellar biosynthesis protein FlhB from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

 Score =  134 bits (336), Expect = 5e-36
 Identities = 111/377 (29%), Positives = 195/377 (51%), Gaps = 24/377 (6%)

Query: 1   MAESDGQERTEEATPRRLQQAKEKGQVARSKELASVSVLV-VGAVSLMWFGEIL-AKGLM 58
           M+E  G E+T+ ATP++++ A+ KGQV +S++L+S+ VL  +  V+L    + + A G M
Sbjct: 1   MSEDSG-EKTKRATPKKIRDARNKGQVGQSQDLSSLLVLAAITEVALTQADDSMQALGDM 59

Query: 59  VAMQRLFELSREEIFDLGKLFDII----GGSLVNLLLPLLMILSTLFIAALIGAAGVGGI 114
           VA    F L R ++ D  + F+      GG L+N  L   M +    +  L+      G 
Sbjct: 60  VA----FPLHRLDV-DFVRAFEETLAHAGGVLLNFTL---MTVGLAIVTRLVAGWIQFGF 111

Query: 115 SFSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQL 174
            F+ EA  P  +++NP++  K+MF  Q+ + L   ++K + +  V + +   +   L  L
Sbjct: 112 LFAPEALQPDPNRLNPMNQAKQMFSGQALINLFMGLVKAVFIGTVIYLVTLPALGSLISL 171

Query: 175 SLDVYPQNIFHALDILLNFVLLISCSLLVVVAI-DIPFQIWQHAEQLKMTKQEVKDEYKD 233
            ++    + +  L  L   ++ I   +L+V+AI D   Q +  A++L+M+++EV+ E+K+
Sbjct: 172 -VNGDLHSYWRGLASLFRHIMHICLGVLLVLAILDFGLQKYFFAKRLRMSEEEVRKEFKE 230

Query: 234 TEGKPEVKGRIRMLQREAAQR---RMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVI 290
            EG P VK   R L R+   +   +    +  AD+++ NP HF+VAL Y+      P +I
Sbjct: 231 MEGDPHVKMHRRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQLI 290

Query: 291 AKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQL 350
            KGVD  A  + E A+   + ++    LAR +Y   ++   IP     AVA +   + +L
Sbjct: 291 VKGVDAEARALIERAKAARVPVIQCIWLARTIYR-EDVGGYIPRETLQAVAHIYRVLREL 349

Query: 351 KQYRRKGG--QRPKLNE 365
                KG   + P+LN+
Sbjct: 350 DD-EAKGEVIEIPELNQ 365