Pairwise Alignments

Query, 376 a.a., flagellar biosynthesis protein FlhB from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

 Score =  111 bits (278), Expect = 3e-29
 Identities = 83/353 (23%), Positives = 169/353 (47%), Gaps = 15/353 (4%)

Query: 4   SDGQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQR 63
           S    +TE+ T +RL+ A  KGQ  ++K+L  ++ L +  +S + F   L + + V  + 
Sbjct: 2   SSSASKTEKPTAKRLRDAARKGQTFKAKDLV-ITCLTLCGISYLVFNSSLFEIMEVYRRI 60

Query: 64  LFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSAEAAMP 123
           +      E+     +  ++G   +  LLPLL++     + + + A    G + ++EA   
Sbjct: 61  IASDFDVELQTYSAMLVLVG---LKTLLPLLLVC---VLTSALPALLQSGFALASEALKL 114

Query: 124 KLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSG---VAFYLIEASQKDLFQLSLDVYP 180
            L  +NP++G K++F +++    +K   K LL  G   +A +++  +Q+ L    L    
Sbjct: 115 NLGALNPINGFKKLFSLRT----VKDTFKALLYLGSFAMALWIVWVTQRQLLFAQLFAQA 170

Query: 181 QNIFHALD-ILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPE 239
            ++F     +LL  VL     +L++V +D   +     +   M K  VK E+K+ +G P+
Sbjct: 171 ADLFAIWGHLLLVLVLAFLACILLIVVLDALSEYGLFMKDQMMDKDAVKREHKEQDGNPQ 230

Query: 240 VKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMAL 299
           +KGR R L  E    ++ + +  + +II NP H ++ + ++      P +     +  AL
Sbjct: 231 IKGRRRDLHMELLSEQVKSDVRSSRMIIANPTHIAIGVYFRPEITLLPFISLMETNQRAL 290

Query: 300 KIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLKQ 352
            +R  A+   + ++    LAR ++ T +    +       V ++L ++ Q++Q
Sbjct: 291 AVRAYAKAVGVPVINDKALARRIFKTHQRYSFLQVQEVEEVLRLLIWLEQVEQ 343