Pairwise Alignments

Query, 376 a.a., flagellar biosynthesis protein FlhB from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., type III secretion protein HrcU from Pseudomonas syringae pv. syringae B728a

 Score =  143 bits (360), Expect = 8e-39
 Identities = 111/354 (31%), Positives = 185/354 (52%), Gaps = 18/354 (5%)

Query: 8   ERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFEL 67
           E+TE+ATP++L+ A+EKGQV +S++L  + VL+  AVS +     LA   +  ++ L  L
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLM--AVSEITLA--LADESVNRLEALLSL 58

Query: 68  SREEIF-DLGKLFDIIGGSLVNLLLPL-LMILSTLFIAALIGAAGVGGISFSAEAAMPKL 125
           S + I        ++I    +++LL   L  +    +  LI +    G  F+ +A     
Sbjct: 59  SFQGIDRSFAASVELIASEGLSVLLSFTLCSVGIAMLMRLISSWMQIGFLFAPKALKIDP 118

Query: 126 SKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLS---LDVYPQN 182
           +K+NP S  K+MF  Q+ + LL S+LK + +    +  ++     L  L+   L  Y   
Sbjct: 119 NKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTY--- 175

Query: 183 IFHALDILLNFVLLISCSLLVVVA-IDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVK 241
            +HAL  L   +L +   LL+ +A ID   Q + HA++L+M+ +++K EYK +EG P VK
Sbjct: 176 -WHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVK 234

Query: 242 GRIRMLQREAAQRRMMAA---LPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
           G  R L +E   +   AA   +  AD+++ NP H++VAL Y+      P++  KG D  A
Sbjct: 235 GHRRQLAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEA 294

Query: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLKQ 352
           L +   A++  I +V +  L R LY  +++ + IP     AV  +   V QL +
Sbjct: 295 LALIARAKKAGIPVVQSIWLTRTLYR-SKVGKYIPRPTLQAVGHIYKVVRQLDE 347