Pairwise Alignments

Query, 376 a.a., flagellar biosynthesis protein FlhB from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., type III secretion protein, hrpY/hrcU family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  182 bits (463), Expect = 9e-51
 Identities = 113/351 (32%), Positives = 199/351 (56%), Gaps = 14/351 (3%)

Query: 8   ERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFEL 67
           ++TE+ TP+RL++A+EKG + +S+++ S   ++  A    + GE +   LM     + EL
Sbjct: 3   DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLM----EVTEL 58

Query: 68  S-REEIFDLGKLFDIIGGSLVNLLLPLLM-ILSTLFIAALIGAAGVGGISFSAEAAMPKL 125
           S R       +   ++G ++V+  + +++ ++    +AA +G     G+ F+ + AMPKL
Sbjct: 59  SMRHMAMPFDEALPLLGTAVVHAAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKL 118

Query: 126 SKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNIFH 185
             ++P    K++F M++ VELLK+ +KV ++    + ++    + LF +       +I  
Sbjct: 119 ENISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIP----DGDIGL 174

Query: 186 ALDIL----LNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVK 241
            L +L     + VL+ +    V+ A+D  +Q WQ+ +Q  MTK EVK EYK+ EG P +K
Sbjct: 175 LLKVLGTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIK 234

Query: 242 GRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKI 301
           G+ + L +E   +  ++ + +A VI+TNP HF+VAL Y+++    PV++AKG   MA ++
Sbjct: 235 GKRKQLHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRM 294

Query: 302 REIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLKQ 352
            EIARE  I ++   PLAR+L+        IP  L   VA+VL +V  L++
Sbjct: 295 VEIAREEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSLQE 345